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chanzuckerberg / cellxgene-census

CZ CELLxGENE Discover Census
https://chanzuckerberg.github.io/cellxgene-census/
MIT License
72 stars 18 forks source link

GeneformerTokenizer updates #1199

Open mlin opened 1 week ago

mlin commented 1 week ago

Updating our GeneformerTokenizer with features newly added upstream.

codecov[bot] commented 1 week ago

Codecov Report

Attention: Patch coverage is 43.47826% with 13 lines in your changes missing coverage. Please review.

Project coverage is 90.93%. Comparing base (fc0281b) to head (9b2bcd3).

:exclamation: Current head 9b2bcd3 differs from pull request most recent head 4b996f8

Please upload reports for the commit 4b996f8 to get more accurate results.

Files Patch % Lines
...xperimental/ml/huggingface/geneformer_tokenizer.py 43.47% 13 Missing :warning:
Additional details and impacted files ```diff @@ Coverage Diff @@ ## main #1199 +/- ## ========================================== - Coverage 91.11% 90.93% -0.19% ========================================== Files 77 77 Lines 5922 5944 +22 ========================================== + Hits 5396 5405 +9 - Misses 526 539 +13 ``` | [Flag](https://app.codecov.io/gh/chanzuckerberg/cellxgene-census/pull/1199/flags?src=pr&el=flags&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=chanzuckerberg) | Coverage Δ | | |---|---|---| | [unittests](https://app.codecov.io/gh/chanzuckerberg/cellxgene-census/pull/1199/flags?src=pr&el=flag&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=chanzuckerberg) | `90.93% <43.47%> (-0.19%)` | :arrow_down: | Flags with carried forward coverage won't be shown. [Click here](https://docs.codecov.io/docs/carryforward-flags?utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=chanzuckerberg#carryforward-flags-in-the-pull-request-comment) to find out more.

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