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chanzuckerberg / cellxgene-census

CZ CELLxGENE Discover Census
https://chanzuckerberg.github.io/cellxgene-census/
MIT License
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Census Docker build fails #376

Closed MatthiasBeyens closed 1 year ago

MatthiasBeyens commented 1 year ago

Describe the bug

I want to reproduce a local Census instance with private data. I'm following the steps of creating a new release (https://github.com/chanzuckerberg/cellxgene-census/tree/main/tools/cellxgene_census_builder). Nonetheless, I'm stuck at the point of building a Docker image.

To Reproduce

Working on main commit 281ffdf53cb1c68a4017fbe40100cef3f759ec05

./cellxgene-census/tools/cellxgene_census_builder/
make image

Added console logging (include error) in console.log

Expected behavior

Successful docker image build :)

Environment

Additional context

Would it ever be possible to reproduce Census platform within my own environment (following the data schema's as suggested) from a utilities and platform perspective? For now I downloaded some h5ad's directly from the Census S3 to make sure I can reproduce the platform as such, independent of h5ad formatting. Much appreciated!

pablo-gar commented 1 year ago

Thanks for raising this @MatthiasBeyens. I will get back to you on this shortly.

pablo-gar commented 1 year ago

Hi @MatthiasBeyens apologies for the delay we have a few conversations internally about this and we have made the decision to not support the builder code for external use. However we are interested in learning about why you wish to build a Census of you own as we may be able to point you in the right direction to accomplish your goals.

For example we or our partners at TileDB may be able to offer you support to use TileDB-SOMA for your ends (which is what the Census utilizes)