chanzuckerberg / cellxgene-census

CZ CELLxGENE Discover Census
https://chanzuckerberg.github.io/cellxgene-census/
MIT License
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deprecate and remove X_sparse_iter when tiledbsoma blockwise iterators are available #832

Closed bkmartinjr closed 8 months ago

bkmartinjr commented 11 months ago

When SOMA support for blockwise iterators are released:

Blockwise iterators will ship in TileDB-SOMA 1.5, so this needs to be deprecated in cellxgene-census version 1.8 and removed in 1.9

atarashansky commented 11 months ago

@atarashansky Pinging myself to stay abreast of this issue.

Downstream dependency: https://github.com/chanzuckerberg/single-cell-data-portal/issues/5973

mlin commented 11 months ago

I have to update the geneformer tokenizer.