Update the Builder and Census schema to use the CxG 5.0 schema version:
[x] builder code requests 5.0 H5ADs
[x] Census schema version is bumped to 2.0.0
[x] Census schema version is bumped in builder code to 2.0.0
[x] Census UBERON pin bumped to 2024-01-18
[x] Confirm no use of CL:0000003, aka native cell. These cells will now be marked as unknown in both obs.cell_type and obs.cell_type_ontology_term_id columns. See related task: #1019
[x] Update assay ID filter list and smart-seq ID list: #1022
Update the Builder and Census schema to use the CxG 5.0 schema version:
5.0
H5ADs2.0.0
2.0.0
2024-01-18
CL:0000003
, akanative cell
. These cells will now be marked asunknown
in bothobs.cell_type
andobs.cell_type_ontology_term_id
columns. See related task: #1019FYI: @pablo-gar @brianraymor @atarashansky @prathapsridharan
Schema spec