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chanzuckerberg / cellxgene-ontology-guide

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ontology guide must download and process pinned ontologies #210

Closed brianraymor closed 3 weeks ago

brianraymor commented 4 months ago

Design

The following pinned ontologies MUST be refreshed:

Ontology OBO Prefix Release Download
Cell Ontology CL 2024-08-16 cl.owl
Experimental Factor Ontology EFO 2024-08-15 EFO 3.69.0 efo.owl
Human Developmental Stages HsapDv 2024-05-28 hsapdv.owl
Mouse Developmental Stages MmusDv 2024-05-28 mmusdv.owl
Mondo Disease Ontology MONDO 2024-08-06 mondo.owl
Uberon multi-species anatomy ontology UBERON 2024-08-07 uberon.owl

The following ontologies will not be updated

Ontology OBO Prefix Release Download
Human Ancestry Ontology HANCESTRO 3.0 hancestro-base.owl
NCBI organismal classification NCBITaxon 2023-06-20 ncbitaxon.owl
Phenotype And Trait Ontology PATO 2023-05-18 pato.owl