uermel
commented
4 months ago Hi @mahrukhusmani, annotation visualization on the web was not supported until recently, but you can now explore the annotations in your browser! Similar to how you were able to explore tomograms in our neuroglancer interface, you can now also visualize of Point-, OrientedPoint-, InstanceSegmentation and SegmentationMask-annotations.
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In order to explore annotations in neuroglancer, simply click on the 'View Tomogram'-button on a Dataset's or Run's page (see red dashed boxes).
This will open the tomogram and annotations associated with this run in a new browser window. Be default, only a subset of annotations is rendered, as explained in our FAQ (see "Which annotations are displayed with a tomogram in Neuroglancer?"). If you want to visualize annotations that are hidden by default, you can toggle them on/off by clicking on the associated tabs (red box). You can toggle the orthogonal slices in the 3D view on/off using the checkbox in the 3D panel (blue box). It's also possible to use volume rendering to display the volume in 3D from within the Rendering menu (orange box).
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Happy to help if anything remains unclear!
You can also explore these annotations using our napari-plugin (find it on github or napari-hub).
Hello,
I was navigating the portal and was having issue looking at the segmentations for some of the datasets. I could not figure out if this was because the segmentations were not there or if I was navigating incorrectly. Can someone please guide me? Thanks.
These are the IDs of the datasets I was looking at: 10001, 10002, 10006
Mahrukh