This PR uses the AMR docker image for the RunSpades task in the AMR workflow; previously the short-read-mngs image had been used. The same version of SPAdes (3.11.1) is now installed on the AMR image.
This fixes an issue where tests for the AMR RunSpades task failed due to their reliance on an updated version of the short-read-mngs image that the test did not have access to. See CZID-9425.
This PR uses the AMR docker image for the RunSpades task in the AMR workflow; previously the short-read-mngs image had been used. The same version of SPAdes (3.11.1) is now installed on the AMR image.
This fixes an issue where tests for the AMR RunSpades task failed due to their reliance on an updated version of the short-read-mngs image that the test did not have access to. See CZID-9425.