[CZID-9448] Use all contigs for GenerateCoverageViz in long-read-mngs

chanzuckerberg / czid-workflows

Portable WDL workflows for CZ ID production pipelines

https://czid.org/

MIT License

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[CZID-9448] Use all contigs for GenerateCoverageViz in long-read-mngs #332

Closed lvreynoso closed 7 months ago

lvreynoso commented 7 months ago

CZID-9448

Fixes a bug where the byteranges generated for coverage viz json files were incorrect, since these byteranges corresponded to contigs in the mapped contigs file (which is not an output) but ultimately the webapp queried the full contigs file.