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chanzuckerberg / czid-workflows

Portable WDL workflows for CZ ID production pipelines
https://czid.org/
MIT License
37 stars 7 forks source link

Fix alignment batch tagging #375

Closed morsecodist closed 3 months ago

morsecodist commented 3 months ago

This object tagging was breaking because it was using the bucket from the index which in practice is usually different from the samples bucket. I was able to repro the issue and fix it on one of the failed samples and I added some more logging because this code has given me trouble before.