chanzuckerberg / idseq-workflows

Portable WDL workflows for IDseq production pipelines
https://idseq.net/
MIT License
31 stars 12 forks source link

raise proper insufficient reads error #112

Closed morsecodist closed 3 years ago

morsecodist commented 3 years ago

The only snag here is we don't know the step name in the error message, and it is in some of them. Though it should be fairly obvious which step this happens in. This will raise the correct error in STAR https://app.clubhouse.io/idseq/story/125231/handle-empty-files-when-checking-for-fasta-vs-fastq.