This PR attempts to address a user request to re-align the consensus genome to the reference to aid in identification of INDELS. The realignment is already performed in the RunMinion step for ONT data, but was not performed for Illumina data. This PR exposes the existing results for ONT and adds a new step to generate the results for Illumina data.
This PR attempts to address a user request to re-align the consensus genome to the reference to aid in identification of INDELS. The realignment is already performed in the
RunMinionstep for ONT data, but was not performed for Illumina data. This PR exposes the existing results for ONT and adds a new step to generate the results for Illumina data.