This changes the default inputs of our pipeline to account for inputs that use midnight primers.
The testing of this is a bit hacky, since the change only occurs on running the entire workflow. To save time, I created a blank fastq.gz file and run that, which only takes about 30 seconds before the pipeline breaks. I am open to any suggestions on if I can do this better though.
This changes the default inputs of our pipeline to account for inputs that use midnight primers.
The testing of this is a bit hacky, since the change only occurs on running the entire workflow. To save time, I created a blank fastq.gz file and run that, which only takes about 30 seconds before the pipeline breaks. I am open to any suggestions on if I can do this better though.