This PR focuses on documentation for the phylotree-ng workflow. In particular, it
updates the phylotree-ng README.md file with a high-level description of the phylotree-ng workflow and how to run the workflow
adds an additional file (Phylotree-ng.md) that contains a detailed description of the workflow and steps, paralleling what was already in the old (Phylotree.md) file.
adds a test_inputs.json file that would enable a user to see how the --input inputs.json file should be set up and to quickly run the workflow on our existing test dataset
I have verified that the documentation matches the steps to run the pipeline.
This PR focuses on documentation for the phylotree-ng workflow. In particular, it
Phylotree-ng.md) that contains a detailed description of the workflow and steps, paralleling what was already in the old (Phylotree.md) file.test_inputs.jsonfile that would enable a user to see how the--input inputs.jsonfile should be set up and to quickly run the workflow on our existing test datasetI have verified that the documentation matches the steps to run the pipeline.