chanzuckerberg / idseq-workflows

Portable WDL workflows for IDseq production pipelines
https://idseq.net/
MIT License
31 stars 12 forks source link

ignore picard failures #169

Closed morsecodist closed 2 years ago

morsecodist commented 2 years ago

As discussed we shouldn't fail the whole pipeline for this marginal feature. I am a bit uncomfortable with the silent failure, I added a log so we could make a metric for this. Seems to be the best option.