@morsecodist I wasn't able to run the diamond merge script successfully, but the out.tsv file should be able to to run through the "RunCallHits" succesfully. I'm not sure whether we'll end up having to change that since you're folding in the diamond changes into the original script anyway.
I split up the alignment tasks into two parts, 1. Running the alignment, 2. Calling the Taxon Hits, which I think makes sense. We should be able to use these tasks in the non_host_alignment.wdl.
@morsecodist I wasn't able to run the diamond merge script successfully, but the out.tsv file should be able to to run through the "RunCallHits" succesfully. I'm not sure whether we'll end up having to change that since you're folding in the diamond changes into the original script anyway.
I split up the alignment tasks into two parts, 1. Running the alignment, 2. Calling the Taxon Hits, which I think makes sense. We should be able to use these tasks in the non_host_alignment.wdl.