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chanzuckerberg / idseq-workflows

Portable WDL workflows for IDseq production pipelines
https://idseq.net/
MIT License
31 stars 12 forks source link

Import idseq-dag contents #34

Closed kislyuk closed 4 years ago

kislyuk commented 4 years ago

The strategy here is to retire the idseq-dag repository (using the github "archive" functionality to make it read-only) and continue any necessary idseq-dag development here. We can certainly remove obsolete code later, but for now I removed the bare minimum of files that were present in the old repo, to preserve the full history and maintain as much continuity between the repos as possible. Even though the idseq_dag/engine/pipeline_flow.py file and other files are no longer in use, I think they are still imported by some of the code paths.

tfrcarvalho commented 4 years ago

OK, I have a personal preference to migrate selectively even if it requires more testing and might code to be adapted. But I can see the pros of your approach as a bit safer.

kislyuk commented 4 years ago

Manually merged in 628fb331fd3612663dbf89e5018d05c31d80ae06 (github is unable to merge this PR correctly in the UI).