Closed rpetit3 closed 3 years ago
My suspicion lands squarely here:
"r2": "",
If r2 is a File? input, can you try deleting that line and see if it then works with miniwdl? (If so, I can then start a discussion with OpenWDL and/or Cromwell on how we should interpret an empty-string input there)
@mlin that was the issue (trying to open empty string). I can work with this thank you very much!
Hello!
I'm really hoping this is just a simple issue and can be resolved as just "user error". But here's the deal I have a workflow that runs fine with Cromwell, but with MiniWDL, I get a "File not found:" error, with no real indication of which file was not found.
Here's the JSON file (samples.json)
Each of the expected inputs exists:
System Details (using conda versions)
Please let me know if I can provide more details, or there is anything you would like me to try. (even better if its just user error and a simple change is needed)
Thank you!