Collapse alignMethodForReadGraph & alignMethodForMarkerGraph into a single alignMethod config option.

chanzuckerberg / shasta

[MOVED] Moved to paoloshasta/shasta. De novo assembly from Oxford Nanopore reads

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Closed bagashe closed 4 years ago

bagashe commented 4 years ago

We can't have two separate options now since we reuse computed alignments.

Tested by running the following ....

sudo ./shasta-build/staticExecutable/shasta --input input_data/500.fasta --memoryBacking 2M --memoryMode filesystem --Align.alignMethod 3