Write suppressed alignment candidates to a csv file.

chanzuckerberg / shasta

[MOVED] Moved to paoloshasta/shasta. De novo assembly from Oxford Nanopore reads

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Write suppressed alignment candidates to a csv file. #144

Closed bagashe closed 4 years ago

bagashe commented 4 years ago

Tested on HG002-Guppy-3.6.0-run1/20.fasta with the following configuration ...

/path/to/shasta --input /path/to/input/file --memoryMode filesystem --memoryBacking 2M --Align.alignMethod 3 --Align.sameChannelReadAlignment.suppressDeltaThreshold 100

Verfied that logging to CSV file works as expected.