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chanzuckerberg / shasta

[MOVED] Moved to paoloshasta/shasta. De novo assembly from Oxford Nanopore reads
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Handle empty downsampled sequences before attempting a SeqAn alignment. #183

Closed bagashe closed 4 years ago

bagashe commented 4 years ago

Also handle SeqAn error gracefully when computing all alignments in the HTTP server.

Test Plan

For E-Coli data set, this error condition was triggered for the read pair (1000, 4092). So I was able to test by computing the alignment between those two reads in the HTTP server.