This adds some more features to the Assess Alignments page in the browser, which allow sampling reads from dead ends, and comparing the number of overhangs from stored alignments. In addition, maxDrift and maxSkip are now checked for align method 3 in computeAllAlignments method.
This adds some more features to the Assess Alignments page in the browser, which allow sampling reads from dead ends, and comparing the number of overhangs from stored alignments. In addition, maxDrift and maxSkip are now checked for align method 3 in
computeAllAlignmentsmethod.Example of the output with dead end sampling:
Example of maxSkip histogram (cutoff at 30):
Example of updated alignment display: