Incorrect CIGAR strings in single-stranded GFA output, Assembly.gfa

chanzuckerberg / shasta

[MOVED] Moved to paoloshasta/shasta. De novo assembly from Oxford Nanopore reads

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Incorrect CIGAR strings in single-stranded GFA output, Assembly.gfa #209

Closed paoloczi closed 3 years ago

paoloczi commented 3 years ago

CIGAR strings in the single-stranded GFA output file, Assembly.gfa, are incorrect.

The double-stranded GFA output file, Assembly-BothStrands.gfa, is not affected, and is correct.

paoloczi commented 3 years ago

This bug is present in Shasta 0.6.0 and previous releases. It is fixed in the latest code and the fix will be available in the next release. To download a current test build containing the fix, follow the directions here.

paoloczi commented 3 years ago

The fix is in Shasta release 0.7.0.