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chanzuckerberg / shasta

[MOVED] Moved to paoloshasta/shasta. De novo assembly from Oxford Nanopore reads
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If MinKNOW was used for basecalling what kind of consensus caller for repeat counts (-- Assembly.consensusCaller) can I use? #233

Closed ElviraTo closed 3 years ago

paoloczi commented 3 years ago

Since we don't have a Bayesian model for that base caller, you can use --Assembly.consensusCaller Modal. That chooses the most frequent repeat count at each assembled position. See here for more information.

ElviraTo commented 3 years ago

@paoloczi Thank you!