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chanzuckerberg / shasta

[MOVED] Moved to paoloshasta/shasta. De novo assembly from Oxford Nanopore reads
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Palindrome quality classifier #235

Closed rlorigro closed 3 years ago

rlorigro commented 3 years ago

This adds a method to detect palindromes with an obvious deviation in quality in the second strand, as with the picture below:

image

However, some palindromes exist that do not have this quality signature

paoloczi commented 3 years ago

Thank you. I will integrate this with the ReadLoader and add an option to turn it on. But it will be some time before I can do it.