Closed rlorigro closed 3 years ago
This adds the option to generate a labeled table of candidates with the following values:
ReadName0,ReadName1,SameStrand,passesReadGraph2Criteria,inReadGraph,
And the automated thresholds that are selected during ReadGraph creation method 2 are now stored in:
assemblerInfo->automatedAlignedFractionThreshold assemblerInfo->automatedMarkerCountThreshold assemblerInfo->automatedMaxDriftThreshold assemblerInfo->automatedMaxSkipThreshold assemblerInfo->automatedMaxTrimThreshold
And can be reused to check whether an alignment passed the thresholds at any time using Assembler::passesReadGraph2Criteria(const AlignmentInfo& info)
Assembler::passesReadGraph2Criteria(const AlignmentInfo& info)
This adds the option to generate a labeled table of candidates with the following values:
ReadName0,ReadName1,SameStrand,passesReadGraph2Criteria,inReadGraph,
And the automated thresholds that are selected during ReadGraph creation method 2 are now stored in:
And can be reused to check whether an alignment passed the thresholds at any time using
Assembler::passesReadGraph2Criteria(const AlignmentInfo& info)