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chanzuckerberg / single-cell-curation

Code and documentation for the curation of cellxgene datasets
MIT License
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Distinguish modality represented when assay is multimodal #434

Closed jahilton closed 1 year ago

jahilton commented 1 year ago

We currently have 2 Collections that contain data from "10x multiome", an assay which measure both expression (RNA) & chromatin accessibility (ATAC).

We have data incoming from Seed Network researchers that will be mCT-seq, which measure expression & methylation - so will present a similar challenge. There is currently no way for a user to know if the data represents the expression or the accessibility measurements (both of those Collection currently only have expression data) I imagine this will be a blocker for including these datasets in the Census.

brianraymor commented 1 year ago

@jahilton - should we reopen/reuse https://github.com/chanzuckerberg/single-cell-curation/issues/195 ?

jahilton commented 1 year ago

Good idea, let's do that