chanzuckerberg / single-cell-curation

Code and documentation for the curation of cellxgene datasets
MIT License
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cellxgene-schema must annotate schema_reference #518

Closed brianraymor closed 1 year ago

brianraymor commented 1 year ago

Design

See schema_reference.

When a dataset is uploaded, CELLxGENE Discover MUST automatically add the schema_reference key and set its value to the permanent URL of this document.

schema_reference

Key schema_reference
Annotator CELLxGENE Discover
Value This MUST be "https://github.com/chanzuckerberg/single-cell-curation/blob/main/schema/4.0.0/schema.md".
nayib-jose-gloria commented 1 year ago

@jahilton @corismall ready for testing!

pip install git+https://github.com/chanzuckerberg/single-cell-curation/@main#subdirectory=cellxgene_schema_cli

jahilton commented 1 year ago

--add-labels did not add uns.schema_reference in our test

jahilton commented 1 year ago

Ran pip install git+https://github.com/chanzuckerberg/single-cell-curation/@main#subdirectory=cellxgene_schema_cli --upgrade --no-deps --force-reinstall then tried again and this passes QA