Update pinned ontology references - Githubissues

chanzuckerberg / single-cell-curation

Code and documentation for the curation of cellxgene datasets

MIT License

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Update pinned ontology references #951

Open brianraymor opened 3 weeks ago

brianraymor commented 3 weeks ago

NOTE: THIS IS A PLACEHOLDER AND IS NOT FINALIZED.

Design

The following pinned ontologies MUST be refreshed:

Ontology	OBO Prefix	Release	Download
Cell Ontology	CL	2024-04-05	cl.owl
Experimental Factor Ontology	EFO	2024-04-15 EFO 3.65.0	efo.owl
Mondo Disease Ontology	MONDO	2024-05-08	mondo.owl
Uberon multi-species anatomy ontology	UBERON	2024-03-22	uberon.owl

The following ontologies will not be updated

Ontology	OBO Prefix	Release	Download
Human Ancestry Ontology	HANCESTRO	3.0	hancestro-base.owl
Human Developmental Stages	HsapDv	2020-03-10	hsapdv.owl
Mouse Developmental Stages	MmusDv	2020-03-10	mmusdv.owl
NCBI organismal classification	NCBITaxon	2023-06-20	ncbitaxon.owl
Phenotype And Trait Ontology	PATO	2023-05-18	pato.owl

Bento007 commented 4 days ago

There is a procedure on how to do this. I estimate 1 day for an engineer.