ontology updates w/ 5.2.0

[jahilton]

• 48d354f5-a5ca-4f35-a3bb-fa3687502252
  • obs.var_time:P7 - update to 7 day [MmusDv:0000117]
• d86517f0-fa7e-4266-b82e-a521350d6d36
  • obs.Dataset:RomanovDev10x - update to 23 day [MmusDv:0000144]
  • obs.Dataset: Mickelsen10x - update to 4wk [MmusDv:0000149]
  • obs.Dataset: Flynn10x - update to 4wk [MmusDv:0000149]
  • obs.SRA_ID:SRR5164436 - update to juvenile [MmusDv:0000178]
  • obs.SRA_ID:SRR5164437 - update to juvenile [MmusDv:0000178]
  • obs.SRA_ID:SRR5164438 - update to 4wk [MmusDv:0000149]
• 613f5480-4957-4f80-b804-0e2b85ac454c
  • obs['age'] = P4 - update to 4 day [MmusDv:0000114]
  • obs['age'] = P7 - update to 7 day [MmusDv:0000117]
• 4828d33d-fb26-42e7-bf36-18293b0eec85
  • obs['donor_id'] = 'pooled_Control_P5' - update to 5 day [MmusDv:0000115]
  • obs['donor_id'] = 'pooled_Deprived_P5' - update to 5 day [MmusDv:0000115]
  • obs['donor_id'] = 'pooled_Control_P7' - update to 7 day [MmusDv:0000117]
  • obs['donor_id'] = 'pooled_Deprived_P7' - update to 7 day [MmusDv:0000117]

[jychien]

• 398e34a9-8736-4b27-a9a7-31a47a67f446
  • kit should be used to update EFO:0008913 (single-cell RNA sequencing) to appropriate assay (PIPseq, Aasteria scRNA-seq, and HIVE CLX). New terms are still at waiting to be assigned at EFO: https://github.com/EBISPOT/
• High-resolution single-cell transcriptomic survey of cardiomyocytes from patients with hypertrophic cardiomyopathy:
  • 'assay_ontology_term_id' should be updated to 3' STRT-seq after new term ID has been assigned at EFO: https://github.com/EBISPOT/efo/issues/2251
• 350fe77e-cc64-482e-a42a-18bec9e4a629
  • For "Stromal cells" subset: ‘Early Theca’ needs to be updated from 'stromal cell of ovary' (CL:0002132) to whatever CL term ID that eventually gets assigned for ‘pre-theca cell’: https://github.com/obophenotype/cell-ontology/issues/2527
• 964581c3-b5ac-494d-9bd4-0dcb6fb058da
  • salivary glandular cell types can be made more specific after CL terms have been looked through: https://github.com/obophenotype/cell-ontology/issues/2524

[corismall]

• Private collection: HiPSC-derived retinal organoid subpopulations from healthy and POAG donors

  • all obs - update to adult stage [HsapDv:0000258]

• Private collection: HiPSC-derived retinal pigmented epithelium from healthy and AMD-GA donors

  • all obs - update to adult stage [HsapDv:0000258]

[corismall]

Private collection: A non-canonical lymphoblast in refractory childhood T-cell acute leukaemia

• for all datasets, all obs - update to pediatric stage [HsapDv:0000264]