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chanzuckerberg
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single-cell-curation
Code and documentation for the curation of cellxgene datasets
MIT License
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fix: load SparseDatasets into memory
#898
Bento007
closed
2 weeks ago
0
chore: update pre-commit versions
#897
Bento007
closed
2 weeks ago
0
chore: roll back checks from patch
#896
Bento007
closed
3 weeks ago
0
Release version 5.0.3
#895
Bento007
closed
3 weeks ago
1
upgrade anndata to latest version
#894
Bento007
opened
3 weeks ago
1
chore: add dependabot.yml
#893
Bento007
closed
2 weeks ago
0
Refreshed ontologies
#892
brianraymor
closed
3 weeks ago
0
chore: update requirements.txt
#891
Bento007
opened
3 weeks ago
1
fix: api_key_file_path for get_datasets
#890
MillenniumFalconMechanic
closed
3 weeks ago
0
Bump to the new version
#889
Bento007
closed
3 weeks ago
0
Complete Migration Check list
#888
Bento007
opened
3 weeks ago
0
pre-migration checks for 5.1
#887
Bento007
closed
2 weeks ago
2
fix: check type of uns["spatial"][library_id] is dict
#886
Bento007
closed
3 weeks ago
0
feat(schema 5.1.0): unique spatial assay ontology term id
#885
MillenniumFalconMechanic
closed
3 weeks ago
1
Update development_stage_ontology_term_id
#884
brianraymor
opened
3 weeks ago
0
editorial
#883
brianraymor
closed
3 weeks ago
0
fix(schema 5.1.0): validate ['library_id']['images'][image] of type u…
#882
MillenniumFalconMechanic
closed
3 weeks ago
1
unit8->uint8
#881
brianraymor
closed
3 weeks ago
0
editorial
#880
brianraymor
closed
3 weeks ago
0
chore(deps): bump jinja2 from 3.1.2 to 3.1.4 in /scripts/migration_assistant
#879
dependabot[bot]
closed
3 weeks ago
0
chore(deps): bump jinja2 from 3.1.2 to 3.1.4 in /scripts/schema_bump_dry_run_genes
#878
dependabot[bot]
closed
2 weeks ago
0
Do not check if X has zero values and release a 5.0 patch.
#877
Bento007
closed
3 weeks ago
1
feat: update X matrix validation to validate Visium assays
#876
nayib-jose-gloria
closed
3 weeks ago
0
fix(5.1.0): type check for spatial and nested values
#875
Bento007
closed
3 weeks ago
4
Update self_reported_ethnicity_term_id
#874
brianraymor
opened
1 month ago
0
cellxgene-schema CLI must update validation for obs['assay_ontology_term_id']
#873
brianraymor
closed
3 weeks ago
1
Updated requirements for assay_ontology_term_id
#872
brianraymor
closed
1 month ago
0
Update requirements for assay_ontology_term_id for Visium Spatial Gene Expression and Slide-seqV2
#871
brianraymor
closed
1 month ago
0
Apply consistent style to assay references
#870
brianraymor
opened
1 month ago
0
cellxgene-schema CLI must add validation for modality and update validation for X
#869
brianraymor
opened
1 month ago
0
updated image requirements
#868
brianraymor
closed
1 month ago
0
cellxgene-schema CLI must update validation for uns['spatial'][library_id]['images']['fullres'] and uns['spatial'][library_id]['images']['hires']
#867
brianraymor
closed
3 weeks ago
1
Update requirements for uns['spatial'][library_id]['images']['fullres'] and uns['spatial'][library_id]['images']['hires']
#866
brianraymor
closed
1 month ago
0
feat: update validation for obs['is_primary_data'] to enforce False if uns['spatial']['is_single'] is False
#865
nayib-jose-gloria
closed
4 weeks ago
3
feat(schema 5.1.0): validate obs[cell_type_ontology_term_id]
#864
MillenniumFalconMechanic
closed
1 month ago
2
feat: cellxgene-schema CLI must add validation for obsm['spatial']
#863
nayib-jose-gloria
closed
1 month ago
0
fix: type checking for spatial
#862
Bento007
closed
3 weeks ago
1
feat(schema 5.1.0): validate obs[array_col], obs[array_row] and obs[in_tissue]
#861
MillenniumFalconMechanic
closed
1 month ago
5
restored 3.1.0 obsm requirements
#860
brianraymor
closed
1 month ago
0
fix(schema 5.1.0): throw error if obsm is not type np.ndarray
#859
Bento007
closed
3 weeks ago
1
feat(schema 5.1.0): validate uns[spatial]
#858
MillenniumFalconMechanic
closed
1 month ago
2
Update datasets notebook to include API key utilities
#857
MillenniumFalconMechanic
closed
3 weeks ago
0
feat(schema 5.1.0): update validation for obsm X_ embeddings
#856
nayib-jose-gloria
closed
1 month ago
2
Update requirements for obsm
#855
brianraymor
closed
1 month ago
0
Update uns[{column}_colors] to match ordering in implementation
#854
brian-mott
closed
2 days ago
2
cellxgene-schema CLI must update validation for obsm embeddings
#853
Bento007
closed
3 weeks ago
0
Explore validation for the orientation of visium images
#852
brianraymor
opened
1 month ago
0
Update suspension_type
#851
brianraymor
opened
1 month ago
0
clarified the Slide-seqV2 requirement
#850
brianraymor
closed
1 month ago
0
Mammary gland cell terms from breast atlas Jamboree
#849
aleixpuigb
opened
1 month ago
1
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