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chanzuckerberg / single-cell

A collection of documents that reflect various design decisions that have been made for the cellxgene project.
MIT License
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Delete empty uns dict keys #684

Closed danieljhegeman closed 8 months ago

danieljhegeman commented 8 months ago

Many datasets are failing a schema validation requirement that uns not contain values that are empty (excludes bool and NoneType types).

joyceyan commented 8 months ago

A related issue we found is that this doesn't actually work if the value is numpy.bool_. Going to be putting up a fix to both the original validation code as well as the migrate script

joyceyan commented 8 months ago

This should now be closed with: https://github.com/chanzuckerberg/single-cell-curation/pull/803