Closed salleejackson2020 closed 1 year ago
@salleejackson2020 : What version of Ubuntu are you using? There's an issue with 22.x that arises from our machine learning tasks. tl;dr : Ubuntu 22.x defaults to Python3.10 and a number of ML libraries are not yet ported to that major release. This happens with EVERY major python release because a significant proportion of ML libraries in python are written in Fortran, and the ports take time. We are actively working on making this a non-issue for Augur.
Looks like its Ubuntu 22.04.1 LTS
On Mon, Feb 20, 2023 at 6:19 PM Sean P. Goggins @.***> wrote:
@salleejackson2020 https://github.com/salleejackson2020 : What version of Ubuntu are you using? There's an issue with 22.x that arises from our machine learning tasks. tl;dr : Ubuntu 22.x defaults to Python3.10 and a number of ML libraries are not yet ported to that major release. This happens with EVERY major python release because a significant proportion of ML libraries in python are written in Fortran, and the ports take time. We are actively working on making this a non-issue for Augur.
— Reply to this email directly, view it on GitHub https://github.com/chaoss/augur/issues/2150#issuecomment-1437694423, or unsubscribe https://github.com/notifications/unsubscribe-auth/AGDVGBPG6AC73WMWJZLCLT3WYQC2PANCNFSM6AAAAAAUGVZ6WQ . You are receiving this because you were mentioned.Message ID: @.***>
@salleejackson2020 : OK, I think there's another PR that just got opened that will make the necessary changes for Python 3.10 work; which would then get us up to 22.04.1 LTS. Give us a week or two. We are getting some key software supply chain security updates (for analysis of repos) done in front of this fix. THANK YOU! @IsaacMilarky / @ABrain7710 .... note.
This issue is resolved in the latest release.
Please help us help you by filling out the following sections as thoroughly as you can.
Description: ValueError thrown when running augur backend --help and running augur --help commands
How to reproduce: Run the commands
Expected behavior: Help description from augur
Screenshots Error log when running augur backend --help Error log when running augur --help
Log files Attach the relevant log files here. Server and installation logs can be found in the
logs/
directory in the rootaugur/
directory, and the logs for each worker are stored in their respective directories. If the logs are pretty long (> 50ish lines or just use your best judgement) please use a Gist or a pastebin. These logs file are required if you would like help solving your issue.Software versions: