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chaoszhang / ASTER

Accurate Species Tree EstimatoR series: a family of optimation algorithms for species tree inference implemented in C++ (including ASTRAL-Pro & Weighted ASTRAL)
GNU Affero General Public License v3.0
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Running astral-lengthweighted #16

Closed kfpbennett closed 10 months ago

kfpbennett commented 10 months ago

I downloaded and compiled the program, but only astral, astral-pro, astral-hybrid, caster-pair, and caster-site are executable in the bin/ directory. How do I run astral-lengthweighted (I have branch lengths but no branch supports)? Thank you.

chaoszhang commented 10 months ago

The short answer is "make astral-lengthweighted". However, if applicable, I HIGHLY recommend local Bayesian support by IQTree + astral-hybrid. You can annotate a gene with 1 second using the following command: iqtree2 -s GeneAlignment.fasta/phylip -m TEST -abayes -te YourGeneTree.newick Remember to remove "/" from each annotated tree using sed.

On Mon, Sep 11, 2023 at 10:52 AM Kevin Bennett @.***> wrote:

I downloaded and compiled the program, but only astral, astral-pro, astral-hybrid, caster-pair, and caster-site are executable in the bin/ directory. How do I run astral-lengthweighted (I have branch lengths but no branch supports)? Thank you.

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kfpbennett commented 10 months ago

Thanks!