chaoszhang / ASTER

Accurate Species Tree EstimatoR: a family of optimation algorithms for species tree inference (including ASTRAL & CASTER)
GNU Affero General Public License v3.0
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Installation completed but still cannot run #23

Closed NZY1314 closed 6 months ago

NZY1314 commented 6 months ago

Hi, I think I have installed the ASTER correctly. But when I tried to run it, it seemed that it did not work. Would you mind telling me how to solve it?

Please check my installation below. Thank you so much.

g++ -v 2>&1 | tail -n 1 gcc version 10.4.0 (GCC) echo 'If installation failed, please ensure g++ version >= 7.5.0' If installation failed, please ensure g++ version >= 7.5.0 mkdir -p bin g++ -std=gnu++11 -march=native -Ofast -pthread src/astral.cpp -o bin/astral4 || g++ -std=c++17 -O2 -pthread src/astral.cpp -o bin/astral4 cp bin/astral4 bin/astral g++ -std=gnu++11 -march=native -Ofast -pthread src/astral-pro.cpp -o bin/astral-pro3 || g++ -std=c++17 -O2 -pthread src/astral-pro.cpp -o bin/astral-pro3 cp bin/astral-pro3 bin/astral-pro g++ -std=gnu++11 -march=native -Ofast -pthread src/astral-hybrid.cpp -o bin/wastral || g++ -std=c++17 -O2 -pthread src/astral-hybrid.cpp -o bin/wastral cp bin/wastral bin/astral-hybrid g++ -std=gnu++11 -march=native -Ofast -pthread src/caster-site.cpp -o bin/caster-site || g++ -std=gnu++17 -O2 -pthread src/caster-site.cpp -o bin/caster-site g++ -std=gnu++11 -march=native -D CUSTOMIZED_ANNOTATION_TERMINAL_LENGTH -Ofast -pthread src/caster-site.cpp -o bin/caster-site_branchlength || g++ -std=gnu++17 -D CUSTOMIZED_ANNOTATION_TERMINAL_LENGTH -O2 -pthread src/caster-site.cpp -o bin/caster-site_branchlength_experimental g++ -std=gnu++11 -march=native -Ofast -pthread src/caster-pair.cpp -o bin/caster-pair || g++ -std=gnu++17 -O2 -pthread src/caster-pair.cpp -o bin/caster-pair g++ -std=gnu++11 -march=native -Ofast -pthread src/waster-site.cpp -o bin/waster-site || g++ -std=gnu++17 -O2 -pthread src/waster-site.cpp -o bin/waster-site echo " Installation complete! " Installation complete!

NZY1314 commented 6 months ago

Here is my problem.

[niuzy@gamma bin]$ caster-site -bash: caster-site: command not found

chaoszhang commented 6 months ago

Try ./caster-site

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From: NZY1314 @.> Sent: Tuesday, April 2, 2024 4:37:31 PM To: chaoszhang/ASTER @.> Cc: Subscribed @.***> Subject: Re: [chaoszhang/ASTER] Installation completed but still cannot run (Issue #23)

Here is my problem.

@.*** bin]$ caster-site -bash: caster-site: command not found

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NZY1314 commented 6 months ago

Thank you so much. It now works!