Closed Rhinogradentia closed 5 years ago
Nadine; Thanks much for the report and apologies about the issues with Python 3.7 compatibility. I pushed a new release (0.6.5) of bcbio.GFF that fixes this issue and should hopefully work cleanly for you. Please let us know if you run into any other problems.
Thank you very much! I will try it.
Hi, I know that you advise to use gffutils, but only for completeness - it seems that changes made to python lately had an influence on the functionality of GFFParser.py:
I used a file handle of an gff file as parameter for GFF.parse and got following error:
This also happens with a script (also in the bcbb repository - gff_to_genbank.py) which I use to convert gff into GenBank.
It is a pity that this library isn't maintained this much anymore, because sometimes it is more convenient to use instead of gffutils.
Best Regards, Nadine