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chapmanb / bcbb

Incubator for useful bioinformatics code, primarily in Python and R
http://bcbio.wordpress.com
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glimmergff_to_proteins.py / Reordering Fasta file #131

Open zeyak opened 4 years ago

zeyak commented 4 years ago

Hi,

Thank you for this very useful script!!

I was wondering if it's possible to create the protein multi fasta file with the order of ref_file (contigs) instead of the glimmer_file (gff) file?

I've re-ordered my assembly from large contigs to smaller ones. However, when I run this script I got my protein multi fasta file in the order of glimmer.gff instead of the contigs.

Regards, Zeynep