Some more fixed on the samplesheet

chapmanb / bcbb

Incubator for useful bioinformatics code, primarily in Python and R

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Some more fixed on the samplesheet #14

Closed brainstorm closed 13 years ago

brainstorm commented 13 years ago

The SampleRef column is "Sample Reference Genome", we were using it the wrong way by putting project info.
More logging on the initial analysis.
AMQPlib does not seem to scale... looking at celery+redis...

chapmanb commented 13 years ago

Roman; Thanks much for these -- they are all merged in.

On Celery/AMQP; I saw your tweets about that. That's probably a bit overkill for what we need here. There is no real need for things to be highly concurrent since runs finish weekly. You'd have to scale up to hundreds of sequencers before you'd even think about concurrency being a bottleneck for this.

If you have a separate project you're working on it might make sense to use that there. Let me know how it goes, Brad