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chapmanb / bcbb

Incubator for useful bioinformatics code, primarily in Python and R
http://bcbio.wordpress.com
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config files #26

Closed tanglingfung closed 13 years ago

tanglingfung commented 13 years ago

Hi,

I was running automated_initial_analysis.py but found a typo in the config files. I restarted the script manually but the program seems to have cached the previous config file and resulted in the same error message. May I know how I should restart the script correctly?

Thanks, Paul

chapmanb commented 13 years ago

Paul; There isn't any caching happening in the script, so I'm not sure why you'd see this behavior. Is it possible you edited a different file than you called from the commandline, or something similar? If you can't figure it out, let me know what you were changing and the errors you're seeing and I can try to think of other explanations.

tanglingfung commented 13 years ago

Brad,

um.. that's weird then.. In fact, I reboot the machine. I just worried I overlooked certain part, but if there isn't any caching, let me see where else can go wrong.

Thanks, Paul

On Wed, May 4, 2011 at 3:54 PM, chapmanb reply@reply.github.com wrote:

Paul; There isn't any caching happening in the script, so I'm not sure why you'd see this behavior. Is it possible you edited a different file than you called from the commandline, or something similar? If you can't figure it out, let me know what you were changing and the errors you're seeing and I can try to think of other explanations.

Reply to this email directly or view it on GitHub: https://github.com/chapmanb/bcbb/issues/26#comment_1102729