Two minor commits to update Tophat alignments. The other updates PicardMetricsParser to handle the output from CollectRnaSeqMetrics from Picard and introduces a subclass of PicardMetrics specifically for collecting Picard metrics from RNASeq data. I left PicardMetrics alone.
Both PicardMetrics and RNASeqPicardMetrics work fine after the update.
Two minor commits to update Tophat alignments. The other updates PicardMetricsParser to handle the output from CollectRnaSeqMetrics from Picard and introduces a subclass of PicardMetrics specifically for collecting Picard metrics from RNASeq data. I left PicardMetrics alone.
Both PicardMetrics and RNASeqPicardMetrics work fine after the update.