chapmanb / bcbb

Incubator for useful bioinformatics code, primarily in Python and R
http://bcbio.wordpress.com
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Sorry for the messy multiple issue pull #60

Closed roryk closed 11 years ago

roryk commented 11 years ago

Two minor commits to update Tophat alignments. The other updates PicardMetricsParser to handle the output from CollectRnaSeqMetrics from Picard and introduces a subclass of PicardMetrics specifically for collecting Picard metrics from RNASeq data. I left PicardMetrics alone.

Both PicardMetrics and RNASeqPicardMetrics work fine after the update.

chapmanb commented 11 years ago

Awesome, thanks for this.