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chapmanb / bcbb

Incubator for useful bioinformatics code, primarily in Python and R
http://bcbio.wordpress.com
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Generic options support #65

Closed roryk closed 11 years ago

roryk commented 11 years ago

You can pass arbitrary options to Tophat like this:

resources:
  tophat:
    options:
      transcriptome-only: True
      b2-very-sensitive: True
      b2-rgd: "7, 3"
chapmanb commented 11 years ago

Thanks Rory, this is great. Looking forward to having the RNA-seq pipeline back up to date.