Closed inti closed 11 years ago
Inti;
Thanks for trying out the new install procedure. What it requires is to be able to do ssh localhost
. If you don't have login passwords you can set this up to be passwordless with keys by doing:
$ cat .ssh/id_rsa.pub >> .ssh/authorized_keys
Then double check that ssh localhost
no longer requires a password. If you're running in a cluster environment where you don't have root, you should also pass the --nosudo
argument to bcbio_nextgen_install.py
.
Hope this gets it working for you. Let us know if you run into more issues.
Hi, that worked. I had to also do chmod 600 ~/.ssh/authorized_keys
Cheers, Inti
Hi, I have the following issue. On my cluster configuration I jump into a public server and from there to the actual head node of the cluster. The set up does not need me to have a password for the cluster since it is done using ssh keys. When I try to install the bcbio_nextgen it aks me for my password. How can I get around this password if I do not have one or what should I enter?
Thanks in advance, inti pedroso
$ python bcbio_nextgen_install.py install_directory data_directory Installing tools... [localhost] Executing task 'install_biolinux' INFO: Config start time: 2013-02-05 14:51:19.267698 INFO: This is a Base Flavor - no overrides DBG [init.py]: Minimal Edition 1.5.3 INFO: This is a minimal INFO: Distribution ubuntu INFO: Get local environment INFO: Ubuntu setup DBG [distribution.py]: Debian-shared setup DBG [distribution.py]: Source=quantal DBG [distribution.py]: Checking target distribution ubuntu [localhost] run: cat /proc/version [localhost] Login password for 'pedrosoi':