I tried to use GFFParser on python 3.3.2, but I got an error.
Python 3.3.2 (default, May 21 2013, 11:50:47)
[GCC 4.2.1 Compatible Apple Clang 4.1 ((tags/Apple/clang-421.11.66))] on darwin
Type "help", "copyright", "credits" or "license" for more information.
from BCBio import GFF
Traceback (most recent call last):
File "", line 1, in
File "/opt/local/Library/Frameworks/Python.framework/Versions/3.3/lib/python3.3/site-packages/BCBio/GFF/init.py", line 3, in
from GFFParser import GFFParser, DiscoGFFParser, GFFExaminer, parse, parse_simple
ImportError: No module named 'GFFParser'
I installed it using pip "/Users/Alvin/Library/Python/3.3/bin/pip install bcbio-gff".
I am new to python, so I am not sure whether is it caused by improper installation or the different version of python.
Alvin;
Unfortunately this module isn't compatible with Python 3. If you use version 2.7 using the same pip install approach it should work cleanly. Hope this fixes it for you.
Hi,
I tried to use GFFParser on python 3.3.2, but I got an error.
Python 3.3.2 (default, May 21 2013, 11:50:47) [GCC 4.2.1 Compatible Apple Clang 4.1 ((tags/Apple/clang-421.11.66))] on darwin Type "help", "copyright", "credits" or "license" for more information.
I installed it using pip "/Users/Alvin/Library/Python/3.3/bin/pip install bcbio-gff".
I am new to python, so I am not sure whether is it caused by improper installation or the different version of python.
Thanks, Alvin