Closed acquarius1990 closed 10 years ago
Thanks for trying out bcbio.variation. It currently requires java 1.7 due to the underlying GATK library dependencies and it appears you're running java 1.6. The cryptic Unsupported major.minor version 51.0
error is the giveaway. Apologies, this was not properly documented in the README. Hope this gets you up and running.
It works great. Thank you!
Hello Dr. Chapman,
I tried to run bcbio.variation but got the following error. Could you help me? Thanks!
java -Xmx1g -jar bcbio.variation-0.1.2-standalone.jar variant-ensemble combine-callers.yaml ~/database/human_g1k_v37.fasta out.vcf gatk.vcf samtools.vcf
Exception in thread "main" java.lang.UnsupportedClassVersionError: org/broadinstitute/sting/gatk/CommandLineGATK : Unsupported major.minor version 51.0 at java.lang.ClassLoader.defineClass1(Native Method) at java.lang.ClassLoader.defineClass(ClassLoader.java:621) at java.security.SecureClassLoader.defineClass(SecureClassLoader.java:124) at java.net.URLClassLoader.defineClass(URLClassLoader.java:260) at java.net.URLClassLoader.access$000(URLClassLoader.java:56) at java.net.URLClassLoader$1.run(URLClassLoader.java:195) at java.security.AccessController.doPrivileged(Native Method) at java.net.URLClassLoader.findClass(URLClassLoader.java:188) at java.lang.ClassLoader.loadClass(ClassLoader.java:307) at sun.misc.Launcher$AppClassLoader.loadClass(Launcher.java:301) at java.lang.ClassLoader.loadClass(ClassLoader.java:252) at java.lang.ClassLoader.loadClassInternal(ClassLoader.java:320) at java.lang.Class.forName0(Native Method) at java.lang.Class.forName(Class.java:169) at bcbio.variation.core$loading4910auto.invoke(core.clj:1) at bcbio.variation.coreinit.load(Unknown Source) at bcbio.variation.coreinit.