Closed lynaghk closed 12 years ago
Kevin; Strange, that worked for me testing with your account. Are you seeing it persistently? Maybe it was a one-off GenomeSpace communication issue. I thought I had this all fixed but let me know if it's still a problem and I can dig more:
user> (get-files :vcf {:username "keminglabs" :password "XXX"})
({:id "/Home/keminglabs/test/freebayes-calls.vcf", :folder
"/Home/keminglabs/test", :filename "freebayes-calls.vcf",
:created-on #inst "2012-07-12T21:06:37.000-00:00"}
{:id "/Home/keminglabs/test/gatk-calls.vcf", :folder
"/Home/keminglabs/test", :filename "gatk-calls.vcf",
:created-on #inst "2012-07-12T21:06:43.000-00:00"})
I've isolated the issue to some classpath stuff---I was running through swank on the vcf project rather than directly from the bcbio project. I'll hammer out checkout deps with technomancy and try to get it all tidied up.
Running (in c302027)
returns
Genomespace directory structure looks like