Closed lynaghk closed 12 years ago
The bcbio.variation.api.file/get-files method is serving up duplicate entries:
bcbio.variation.api.file/get-files
({:id "gs:/Home/keminglabs/test/freebayes-calls.vcf", :tags ("test"), :folder "/Home/keminglabs/test", :filename "freebayes-calls.vcf"} {:id "gs:/Home/keminglabs/test/gatk-calls.vcf", :tags ("test"), :folder "/Home/keminglabs/test", :filename "gatk-calls.vcf"} {:id "gs:/Home/keminglabs/test/filter/freebayes-calls-filter.vcf", :tags ("test/filter"), :folder "/Home/keminglabs/test/filter", :filename "freebayes-calls-filter.vcf"} {:id "gs:/Home/keminglabs/test/filter/gatk-calls-filter.vcf", :tags ("test/filter"), :folder "/Home/keminglabs/test/filter", :filename "gatk-calls-filter.vcf"} {:id "gs:/Home/keminglabs/test/freebayes-calls.vcf", :tags ("test"), :folder "/Home/keminglabs/test", :filename "freebayes-calls.vcf"} {:id "gs:/Home/keminglabs/test/gatk-calls.vcf", :tags ("test"), :folder "/Home/keminglabs/test", :filename "gatk-calls.vcf"} {:id "gs:/Home/keminglabs/test/filter/freebayes-calls-filter.vcf", :tags ("test/filter"), :folder "/Home/keminglabs/test/filter", :filename "freebayes-calls-filter.vcf"} {:id "gs:/Home/keminglabs/test/filter/gatk-calls-filter.vcf", :tags ("test/filter"), :folder "/Home/keminglabs/test/filter", :filename "gatk-calls-filter.vcf"})
Restarting lein doesn't fix the issue. The server tmp directory matches up with genomespace: both only have four files total (gatk and freebayes and their filtered variants).
The
bcbio.variation.api.file/get-files
method is serving up duplicate entries:Restarting lein doesn't fix the issue. The server tmp directory matches up with genomespace: both only have four files total (gatk and freebayes and their filtered variants).