updated gnomad exome for hg38 - much faster from gnomad google cloud

chapmanb / cloudbiolinux

CloudBioLinux: configure virtual (or real) machines with tools for biological analyses

http://cloudbiolinux.org

MIT License

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updated gnomad exome for hg38 - much faster from gnomad google cloud #320

Closed naumenko-sa closed 5 years ago

naumenko-sa commented 5 years ago

Please review - it became much faster now

naumenko-sa commented 5 years ago

downloading is fast but processing is still very slow. vt rminfo is 3 times faster than bcftools annotate -x but randomly fails in the pipe. needs more testing.