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chapmanb / cloudbiolinux

CloudBioLinux: configure virtual (or real) machines with tools for biological analyses
http://cloudbiolinux.org
MIT License
257 stars 158 forks source link

filtered non-unique variants in hg38/gnomad_exome. using the single v… #325

Closed naumenko-sa closed 4 years ago

naumenko-sa commented 4 years ago

…cf for hg38 and grch37

kokyriakidis commented 4 years ago

vcf=${vcf_prefix}${vcf_file} in gnomad.yaml for GRCh37 should change to vcf=${url_prefix}${vcf_file} in order to work, or you have to change url_prefix to vcf_prefix earlier in the file