chapmanb / cloudbiolinux

CloudBioLinux: configure virtual (or real) machines with tools for biological analyses
http://cloudbiolinux.org
MIT License
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Update dbsnp.yaml #411

Closed kokyriakidis closed 8 months ago

kokyriakidis commented 1 year ago

I got the following error when installing .40 file

HTTP request sent, awaiting response... 200 OK
Length: 3118040 (3,0M) [application/x-gzip]
Saving to: ‘dbsnp-156-orig.vcf.gz.tbi’

dbsnp-156-orig.vcf. 100%[===================>]   2,97M  2,74MB/s    in 1,1s    

2023-04-14 18:23:08 (2,74 MB/s) - ‘dbsnp-156-orig.vcf.gz.tbi’ saved [3118040/3118040]

Writing to .wdbw9a
[W::vcf_parse_info] Extreme INFO/RS value encountered and set to missing at NC_000001.11:6259533
[E::bgzf_uncompress] CRC32 checksum mismatch
[E::bgzf_uncompress] Inflate operation failed: 1
[W::vcf_parse] Contig '6,.|dbGaP_PopFreq:1,0,0' is not defined in the header. (Quick workaround: index the file with tabix.)
[E::bcf_hdr_parse_line] Could not parse the header line: "##contig=<ID=6,.|dbGaP_PopFreq:1,0,0>"
[E::vcf_parse] Could not add dummy header for contig '6,.|dbGaP_PopFreq:1,0,0'
Merging 2 temporary files
Cleaning
Done
rchekaluk commented 10 months ago

Nudge