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chapmanb / homebrew-cbl

Homebrew repository for CloudBioLinux: incubator for formulas to end up in homebrew-science
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biobambam compilation on OSX #6

Closed roryk closed 10 years ago

roryk commented 10 years ago

I'm having trouble figuring out why this is, but if I manually download https://github.com/gt1/biobambam/archive/0.0.125-release-20140221093621.tar.gz and install it with the formula commands it works fine, but if I use the formula itself, it fails like this:

-rw-r--r--  1 rory  staff     265 Apr 14 10:41 vt.rb
rory@clotho:~/cache/homebrew-cbl (master)$ brew install biobambam.rb
==> Downloading https://github.com/gt1/biobambam/archive/0.0.125-release-20140221093621.tar.gz
Already downloaded: /Library/Caches/Homebrew/biobambam-0.0.125.tar.gz
==> ./configure --prefix=/usr/local/Cellar/biobambam/0.0.125
and libmaus_LIBS to avoid the need to call pkg-config.
See the pkg-config man page for more details.

To get pkg-config, see <http://pkg-config.freedesktop.org/>.
See `config.log' for more details

READ THIS: https://github.com/Homebrew/homebrew/wiki/troubleshooting

Just sticking this up here for a note so I don't forget what was happening and to see if you had any idea.s

chapmanb commented 10 years ago

Rory; If you run with the verbose option (brew install -v) does it provide any more clues? brew does some work to setup compilers and the environment, so my guess is something is different inside of the brew compile environment compared to externally but I don't have a good guess as to what.

roryk commented 10 years ago

Thanks! -v was the magic I needed to figure out what was up.