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charite / Q

Q ChIP-seq peak caller
http://charite.github.io/Q/
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"Trying to open BAM file and ZLIB is not available!" #2

Closed PanosFirmpas closed 9 years ago

PanosFirmpas commented 9 years ago

Hi, We've tried installing and running "Q" in two different Ubuntu systems, and in both cases configure/make/makeinstall runs smoothly but then when we try to run it with "-t afile.bam" and "-o somefolder" , we get the following error:

" ERROR: Trying to open BAM file and ZLIB is not available! ERROR: Could not open .bam ! ERROR: Function 'ReadAlignmentFile' failed !" "

It looks like a problem with seqan but I don't know what I could do to fix it, any ideas?

hansenp commented 9 years ago

Try

sudo apt-get install zlib1g-dev libbz2-dev libboost-dev libgomp1

and recompile Q. Alternatively, use the precompiled linux binary for Q which can be downloaded from here

http://charite.github.io/Q/downloads/executables/Linux_x86_64_binary/Q-1.0.0/Q

Best, Peter